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Recent publications
Lake, J. A., C. W. Herbold, M. C.
Rivera, J. A. Servin, and R. G. Skophammer Rooting the Tree of
Life Using Nonubiquitous Genes. Molec. Biol. Evol.,
24:130-136, (2007).
Skophammer, R. G., C. W. Herbold, M.
C. Rivera, J. A. Servin, and J. A. Lake. Evidence that the Root
of the Tree of Life is Not within the Archaea. Molec. Biol. Evol.,
23:1648-1651 (2006).
Simonson, A.B., J. A. Servin, R. G.
Skophammer, C. W. Herbold, M. C. Rivera, and J. A. Lake.
Decoding the Genomic Tree of Life. Proc. Natl. Acad. Sci..,
102, 6608-6613, (2005).
Lake, J. A., J. E. Moore, A. B.
Simonson, and M. C. Rivera, Fulfilling Darwin’s Dream. Pp.
184-206. In Microbial Evolution: Concepts and Controversies. J.
Sapp, (ed). Oxford University Press, New York. (2005).
Rivera, M.C.
and J.A. Lake, The Ring of Life Provides Evidence for a Genome
Fusion Origin of Eukaryotes. Nature, 431, 152-155,
(2004)
Lake, J. A. and M. C. Rivera,
Deriving the Genomic Tree of Life in the Presence of Horizontal Gene
Transfer: Conditioned Reconstruction, Molecular Biology and
Evolution 21:681-690, (2004).
Rivera, M. C.,
R. Jain, J. E. Moore, and J.A. Lake, Horizontal Gene Transfer
Accelerates Genome Innovation and Evolution. Molecular Biology
and Evolution 20:1598-1602, (2003).
Jain, R., M. C. Rivera, J. E.
Moore, and J. A. Lake. Non-clonal Evolution of Microbes.
Biological Journal of the Linnean Society 79:27-32 (2003).
Lake, J. A., R. Jain, J. Moore, and
M. C. Rivera, Genome Evolution and the Impact of the Physical
Environment, Pp. 121-130. In Evolution on Planet Earth, L.
Rothschild, (ed). Academic Press, London (2002).
Jain, R., M. C. Rivera, J. E.
Moore, and J. A. Lake. Horizontal Gene Transfer in Microbial Genome
Evolution. Theor.
Popul. Biol., 61,
489-495 (2002).
Jain, R., M. C. Rivera, and J.
A. Lake. Horizontal Transfer Among Genomes: The Complexity
Hypothesis. Proc. Natl. Acad. Sci., 96, 3801-3806, (1999).
Lake, J. A., R. Jain, and M. C.
Rivera. Mix and Match in the Tree of Life. Science,
283, 2027, (1999).
Rivera, M. C.,
R. Jain, J. Moore, and J. A. Lake. Genomic Evidence for Two
Functionally Distinct Gene Classes. Proc. Natl. Acad. Sci.,
95, 6239-6244, (1998).
Lake, J. A., R. Jain, J. Moore, and
M. C. Rivera. Hyperthermophilic and Mesophilic Origins of the
Eukaryotic Genome. In Thermophiles: The Keys to Molecular
Evolution and the Origin of Life? Wiegel, J. and M. W. W.
Adams, (eds.), Taylor and Francis Press, London, (1998).
Lake, J. A., and M. C. Rivera.
The Prokaryotic Origin of Eukaryotes. In Horizontal Gene
Transfer. M. Syvanen and C. I. Kado, (eds), Chapman and Hall,
New York, (1998).
Lake, J. A., and M. C. Rivera.
Methanococcus Genome, Science, 273:1058, (1996).
Aguinaldo, A. M., J. M. Turbeville, L.
Linford, M. C. Rivera, J. Garey, R. Raff, and J. A. Lake.
Evidence for a Clade of Nematodes, Arthropods and other Moulting
Animals. Nature, 387, 489-493 (1997).
Shankweiler, G. W., A. Scheinman, T.
Atha, M. C. Rivera, A. Aguinaldo and J. A. Lake.
Purification of Ribosomes, Ribosomal Subunits and Polysomes. In
Cell Biology Laboratory Manual, Spector, D. L., Goldman, R. D.,
and Leinwand, L. A., (eds.), Cold Spring Harbor Press, Cold Spring
Harbor, New York, (1998).
Lake, J. A., and M. C. Rivera,
The Prokaryotic Ancestry of Eukaryotes. In Evolution of Microbial
Life, Roberts, D. McL., Sharp P., Alderson G., and Collins, M.,
(eds.), Cambridge University Press, Cambridge, UK., (1996).
Rivera, M. C.
and J. A. Lake. On the Phylogenetic Position of Methanopyrus
kandleri, Int. J. Syst. Bacteriol., 46, 348-351, (1996).
Lake, J. A., and M. C. Rivera.
Was the Nucleus the First Endosymbiont? Proc. Natl. Acad. Sci.,
91, 2880, (1994).
Rivera, M. C.,
and J. A. Lake. Evidence that Eukaryotes and Eocyte Prokaryotes are
Immediate Relatives. Science, 257, 74-76, (1992).
Lake, J. A., and M. C. Rivera,
Phylogenetic Relationships of Organisms, Encyclopedia of
Microbiology, 1, 6046, (1992).
Oakes, M., A. Scheinman, M. Rivera,
D. Soufer, G. Shankweiler, and J. Lake, Evolving Ribosome Structure
and Function: rRNA and the Translation Mechanism, in Cold Spring
Harbor Symposia on Quantitative Biology vol. LII, 675-685, Cold
Spring Harbor Laboratory, (1987). |
